Research Projects
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Paper Publications
- Wei Zheng, Qigige Wuyun, Yang Li, Quancheng Liu, Xiaogen Zhou, Chunxiang Peng , Yi-Heng Zhu, Lydia Freddolino, Yang Zhang.Deep learning-based single- and multi-domain protein structure prediction with D-I-TASSER,Nature Biotechnology,2025,:DOI: 10.1038/s41587-025-02654-4
- Zhu Yi-Heng, Liu Zi, Ding Yu, Ji Zhiwei, Yu Dong-Jun.Machine Learning for Protein Function Prediction.,Methods in molecular biology (Clifton, N.J.),2025,2947:29-48(co-first author)
- Yi-Heng Zhu , Shuxin Zhu , Xuan Yu , He Yan , Yan Liu , Xiaojun Xie , Dong-Jun Yu *, Rui Ye *.MKFGO: integrating multi-source knowledge fusion with pretrained language model for high-accuracy protein function prediction,Briefings in Bioinformatics,2025,26(4):bbaf420
- Zhang Mingyue, Wang Hongwei, Ding Yu, Zhu Yiheng, Xu Huanliang, La Honggui, Wang Zhenxing, Zhai Zhaoyu.UniMethylNet: A Universal DNA Methylation Site Prediction Network Integrating a Neural Network and an Attention Mechanism,JOURNAL OF CHEMICAL INFORMATION AND MODELING,2025,:-(Participating authors)
- Liu Zi, Qiu Wang-Ren, Liu Yan, Yan He, Pei Wenyi, Zhu Yi-Heng, Qiu Jing.A comprehensive review of computational methods for Protein-DNA binding site prediction,ANALYTICAL BIOCHEMISTRY,2025,703:-(Co corresponding author)
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