Paper Publications
- [11] Yang Shengdie, Bezemer T Martijn, Yuan Xiaohang, Liu Xiaoyu, Wan Ting, Liu Feihong, Wen Tao, Shen Qirong, Yuan Jun.Design of effective synbiotics against aboveground insect herbivory through characterization of host plant rhizosphere microbiota and metabolites.,Molecular plant,2025,:-(Participating authors)
- [12] Niu Guoqing, Liu Weiye, Zhang Tianjiao, Ma Jie, Yuan Xiaohang, Xie Penghao, Yang Shengdie, Ding Zhexu, Fang Jing, Zeng Jianguo, Wen Tao, Shen Qirong, Yuan Jun.Deciphering Conserved Rhizosphere Metabolite-Microbiome Interactions for Crop Drought Resistance.,Global change biology,2025,31(12):-(Participating authors)
- [13] Bai Defeng, Chen Tong, Xun Jiani, Ma Chuang, Luo Hao, Yang Haifei, Cao Chen, Cao Xiaofeng, Cui Jianzhou, Deng Yuan-Ping, Deng Zhaochao, Dong Wenxin, Dong Wenxue, Du Juan, Fang Qunkai, Fang Wei, Fang Yue, Fu Fangtian, Fu Min, Fu Yi-Tian, Gao He, Ge Jingping, Gong Qinglong, Gu Lunda, Guo Peng, Guo Yuhao, Hai Tang, Liu Hao, He Jieqiang, He Zi-Yang, Hou Huiyu, Huang Can, Ji Shuai, Jiang ChangHai, Jiang Gui-Lai, Jiang Lingjuan, Jin Ling N., Kan Yuhe, Kang Da, Kou Jin, Lam Ka-Lung, Li Changchao, Li Chong, Li Fuyi, Li Liwei, Li Miao, Li Xin, Li Ye, Li Zheng-Tao, Liang Jing, Lin Yongxin, Liu Changzhen, Liu Danni, Liu Fengqin, Liu Jia, Liu Tianrui, Liu Tingting, Liu Xinyuan, Liu Yaqun, Liu Bangyan, Liu Minghao, Lou Wenbo, Luan Yaning, Luo Yuanyuan, Lv Hujie, Ma Tengfei, Mai Zongjiong, Mo Jiayuan, Niu Dongze, Pan Zhuo, Qi Heyuan, Shi Zhanyao, Song Chunjiao, Sun Fuxiang, Sun Yan, Tian Sihui, Wan Xiulin, Wang Guoliang, Wang Hongyang, Wang Hongyu, Wang Huanhuan, Wang Jing, Wang Jun, Wang Kang, Wang Leli, Wang Shao-kun, Wang Xinlong, Wang Yao, Xiao Zufei, Xing Huichun, Xu Yifan, Yan Shu-yan, Yang Li, Yang Song, Yang Yuanming, Yao Xiaofang, Yousuf Salsabeel, Yu Hao, Lei Yu, Yuan Zhengrong, Zeng Meiyin, Zhang Chunfang, Zhang Chunge, Zhang Huimin, Zhang Jing, Zhang Na, Zhang Tianyuan, Zhang Yi-Bo, Zhang Yupeng, Zhang Zheng, Zhou Mingda, Zhou Yuanping, Zhu Chengshuai, Zhu Lin, Zhu Yue, Zhu Zhihao, Zou Hongqin, Zuo Anna, Dong Wenxuan, Wen Tao, Chen Shifu, Li Guoliang, Gao Yunyun, Liu Yong-Xin.EasyMetagenome: A user-friendly and flexible pipeline for shotgun metagenomic analysis in microbiome research,IMETA,2025,:-(Co corresponding author)
- [14] 文艺,文涛,牛国庆,曾建国,景天忠,袁军.基于大数据鉴定农田和非农业土壤细菌群落组成及功能特征,江苏农业科学,2025,53(08):242-248(Correspondence Author)
- [15] 贾南豫,朱水英,蒋栋,杨盛蝶,牛国庆,韩鑫,文涛,袁军,沈其荣.施用液体有机肥对干旱胁迫下玉米和小麦生长及根际微生物的影响,南京农业大学学报,2024,48(05):1060-1069(Participating authors)
- [16] Huang Weijie,Ma Tengfei,Liu Xingyan,Xu Yihan,Gu Jingting,Gu Yifan,Yuan Jun,Wen Tao,Xue Chao,Shen Qirong.Degradation of Complex Carbon Sources in Organic Fertilizers Facilitates Nitrogen Fixation,JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY,2024,72(23):12988-13000(Participating authors)
- [17] Shi Chaohong, Xie Penghao, Ding Zhexu, Niu Guoqing, Wen Tao, Gu Wenjie, Lu Yusheng, Wang Fengying, Li Wanling, Zeng Jianguo, Shen Qirong, Yuan Jun.Inhibition of pathogenic microorganisms in solid organic waste via black soldier fly larvae-mediated management,SCIENCE OF THE TOTAL ENVIRONMENT,2024,913:-(Participating authors)
- [18] Gao Yunyun, Peng Kai, Bai Defeng, Bai Xiao-Ye, Bi Yujing, Chen Anqi, Chen Baodong, Chen Feng, Chen Juan, Chen Lei, Chen Tong, Chen Wei, Cheng Xu, Cheng Yanfen, Cui Jie, Dai Jingjing, Dai Junbiao, Dai Zhaolai, Deng Ye, Deng Yi-Zhen, Ding Wei, Fang Zhencheng, Fu Wei, Gao Hanbing, Gu Shaohua, Guo Xue, Guo Xuguang, Han Dongfei, He Lele, He Yatao, Hou Hui-Yu, Jia Baolei, Jia Gengjie, Jiao Shuo, Jin Wei, Ju Feng, Ju Zhicheng, Kong Siyuan, Lan Canhui, Li Bing, Li Da, Li Diyan, Li Jingdi, Li Meng, Li Qi, Li Qiang, Li Wen-Jun, Li Xiaofang, Li Xuemeng, Li Yahui, Li You-Gui, Liang Zhibin, Ling Ning, Liu Fufeng, Liu Qing, Liu Shuang-Jiang, Lu Hongye, Lu Qi, Luo Guangwe, Luo Hao, Luo Yuheng, Lyu Hujie, Ma Chuang, Ma Liyuan, Ma Tengfei, Ni Jinfeng, Pang Ziqin, Qiang Xiaojing, Qin Yuan, Qu Qingyue, Ran Chao, Ren Shuqiang, Shang Haitao, Song Luyang, Sun Linyang, Sun Weimin, Tang Liping, Tian Jian, Wang Kai, Wang Mengzhi, Wang Ming-Ke, Wang Tao, Wang Xiao-Yan, Wang Yao, Wang Yiwen, Wang Youshan, Wei Hailei, Wei Hong, Wei Zhong, Wen Tao, Wu Jiqiu, Wu Linhuan, Wu Linkun, Xi Jiao, Xie Bo, Xu Guofang, Xu Jun, Xu Shanshan, Xue Qing, Yan Liping, Yang Haifei, Yang Jun, Yang Junbo, Yang Ruifu, Yang Yalin, Yang Ying-Jie, Yao Xiaofang, Yao Yanpo, Yousuf Salsabeel, Yu Ke, Yuan Zhengrong, Yuan Zhilin, Zhang Dong, Zhang Tianyuan, Zhang Weipeng, Zhang Yunzeng, Zhang Zhaonan, Zhang Zhen, Zhang Zhi-Feng, Zhao Shengguo, Zhao Wei, Zheng Maosheng, Zheng Ziqiang, Zhou Xin, Zhou Yuanping, Zhou Zhigang, Zhu Mo, Zhu Yong-Guan, Chu Haiyan, Bai Yang, Liu Yong-Xin.The Microbiome Protocols eBook initiative: Building a bridge to microbiome research,iMeta,2024,(Participating authors)
- [19] Xin Lei, Xie Penghao, Wen Tao, Niu Guoqing, Yuan Jun.Transfer learning enables predictions in soil-borne diseases,Soil Ecology Letters,2024,6(4):240258-Article No.: 240258(Participating authors)
- [20] Wen Tao,Niu Guoqing,Chen Tong,Shen Qirong,Yuan Jun,Liu Yong-Xin.The best practice for microbiome analysis using R,PROTEIN & CELL,2023,(First Author)

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