Scientific Research
Paper Publications
- Long-Chen Shen, Yumeng Zhang, Zhikang Wang, Dene R. Littler, Yan Liu, Jinhui Tang, Jamie Rossjohn, Dong-Jun Yu*, and Jiangning Song*. Self-iterative multiple-instance learning enables the prediction of CD4+ T cell immunogenic epitopes [J]. Nature Machine Intelligence, 2025, 7(8): 1250–1265.,Nature Machine Intelligence,2025,7(8):1250–1265
- Long-Chen Shen, Yan Liu, Zi Liu, Yumeng Zhang, Zhikang Wang, Yuming Guo, Jamie Rossjohn, Jiangning Song*, and Dong-Jun Yu*. Supervised contrastive learning enhances MHC-II peptide binding affinity prediction,Expert Systems with Applications,2025,269:12646
- Long-Chen Shen, Dong-Jun Yu*, and Jiangning Song*. Learning conformational flexibility of immune receptors: Protein dynamics prediction,Nature Machine Intelligence,2025,7:1600–1601
- Yan Liu, Sheng Guan, He Yan, Long-Chen Shen, Yiheng Zhu, Ji-Peng Qiang, and Guo Wei*. Genome- and peak-informed two-stage framework for scATAC-seq cell type identification,Bioinformatics,2026,42(2):btaf682
- Yan Liu, Sheng Guan, He Yan, Long-Chen Shen, Ji-Peng Qiang*, and Guo Wei*. Cell type annotation for scATAC-seq via DNA large language model and graph domain adaptation,PLOS Computational Biology,2026,22(4):e1014226
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MOBILE Version